Default box-and-whisker panel function for Xpose 4

This is the box-and-whisker panel function for Xpose 4. This is not intended to be used outside the xpose.plot.bw function. Most of the arguments take their default values from xpose.data object but this can be overridden by supplying them as arguments to xpose.plot.bw.

Usage

xpose.panel.bw(
  x,
  y,
  object,
  subscripts,
  groups = NULL,
  inclZeroWRES = FALSE,
  onlyfirst = FALSE,
  samp = NULL,
  xvarnam = NULL,
  yvarnam = NULL,
  type = object@Prefs@Graph.prefs$type,
  col = object@Prefs@Graph.prefs$col,
  pch = object@Prefs@Graph.prefs$pch,
  cex = object@Prefs@Graph.prefs$cex,
  lty = object@Prefs@Graph.prefs$lty,
  fill = object@Prefs@Graph.prefs$col,
  ids = NULL,
  idsmode = object@Prefs@Graph.prefs$idsmode,
  idsext = object@Prefs@Graph.prefs$idsext,
  idscex = object@Prefs@Graph.prefs$idscex,
  idsdir = object@Prefs@Graph.prefs$idsdir,
  bwhoriz = object@Prefs@Graph.prefs$bwhoriz,
  bwratio = object@Prefs@Graph.prefs$bwratio,
  bwvarwid = object@Prefs@Graph.prefs$bwvarwid,
  bwdotpch = object@Prefs@Graph.prefs$bwdotpch,
  bwdotcol = object@Prefs@Graph.prefs$bwdotcol,
  bwdotcex = object@Prefs@Graph.prefs$bwdotcex,
  bwreccol = object@Prefs@Graph.prefs$bwreccol,
  bwrecfill = object@Prefs@Graph.prefs$bwrecfill,
  bwreclty = object@Prefs@Graph.prefs$bwreclty,
  bwreclwd = object@Prefs@Graph.prefs$bwreclwd,
  bwumbcol = object@Prefs@Graph.prefs$bwumbcol,
  bwumblty = object@Prefs@Graph.prefs$bwumblty,
  bwumblwd = object@Prefs@Graph.prefs$bwumblwd,
  bwoutcol = object@Prefs@Graph.prefs$bwoutcol,
  bwoutcex = object@Prefs@Graph.prefs$bwoutcex,
  bwoutpch = object@Prefs@Graph.prefs$bwoutpch,
  grid = object@Prefs@Graph.prefs$grid,
  logy = FALSE,
  logx = FALSE,
  force.x.continuous = TRUE,
  binvar = NULL,
  bins = 10,
  ...
)

Arguments

x

Name(s) of the x-variable.

y

Name(s) of the y-variable.

object

An xpose.data object.

subscripts

The standard Trellis subscripts argument (see xyplot).

groups

Name of the variable used for superpose plots.

inclZeroWRES

Logical value indicating whether rows with WRES=0 is included in the plot.

onlyfirst

Logical value indicating whether only the first row per individual is included in the plot.

samp

An integer between 1 and object@Nsim (seexpose.data-class) specifying which of the simulated data sets to extract from SData.

xvarnam

Character string with the name of the x-variable.

yvarnam

Character string with the name of the y-variable.

type

Character value indicating the type of display to use: "l"=lines, "p"=points, "b"=both points and lines.

col

Colour of lines and plot symbols.

pch

Plot character to use.

cex

Size of the plot characters.

lty

Line type.

fill

Fill colour.

ids

Character value with the name of the variable to label data points with.

idsmode

Determines the way text labels are added to plots. NULL means that only extreme points are labelled. Non-NULL means all data points are labelled. (See link{xpose.plot.default})

idsext

See link{xpose.plot.bw}

idscex

Size of text labels.

idsdir

A value of "both" (the default) means that both high and low extreme points are labelled while "up" and "down" labels the high and low extreme points respectively. See xpose.plot.bw

bwhoriz

logical value indicating whether box and whiskers should be horizontal or not. The default is FALSE.

bwratio

Ratio of box height to inter-box space. The default is 1.5. An argument for panel.bwplot.

bwvarwid

Logical. If TRUE, widths of boxplots are proportional to the number of points used in creating it. The default is FALSE. An argument for panel.bwplot.

bwdotpch

Graphical parameter controlling the dot plotting character 'bwdotpch="|"' is treated specially, by replacing the dot with a line. The default is 16. An argument for panel.bwplot.

bwdotcol

Graphical parameter controlling the dot colour - an integer or string. See 'col'. The default is black. An argument for panel.bwplot.

bwdotcex

The amount by which plotting text and symbols should be scaled relative to the default. 'NULL' and 'NA' are equivalent to '1.0'. An argument for panel.bwplot.

bwreccol

The colour to use for the box rectangle - an integer or string. The default is blue. See trellis.par.get and "box.rectangle".

bwrecfill

The colour to use for filling the box rectangle - an integer or string. The default is transparent (none). See trellis.par.get and "box.rectangle".

bwreclty

The line type for the box rectangle - an integer or string. The default is solid. See trellis.par.get and "box.rectangle".

bwreclwd

The width of the lines for the box rectangle - an integer. The default is 1. See trellis.par.get and "box.rectangle".

bwumbcol

The colour to use for the umbrellas - an integer or string. The default is blue. See trellis.par.get and "box.umbrella".

bwumblty

The line type for the umbrellas - an integer or string. The default is solid.See trellis.par.get and "box.umbrella".

bwumblwd

the width of the lines for the umbrellas - an integer. The default is 1. See trellis.par.get and "box.umbrella".

bwoutcol

The colour to use for the outliers - an integer or string. The default is blue. See trellis.par.get and "box.symbol".

bwoutcex

The amount by which outlier points should be scaled relative to the default. 'NULL' and 'NA' are equivalent to '1.0'. The default is 0.8. See trellis.par.get and "box.symbol".

bwoutpch

The plotting character, or symbol, to use for outlier points. Specified as an integer. See R help on 'points'. The default is an open circle. See trellis.par.get and "box.symbol".

grid

logical value indicating whether a visual reference grid should be added to the graph. (Could use arguments for line type, color etc).

logy

Logical value indicating whether the y-axis should be logarithmic.

logx

Logical value indicating whether the x-axis should be logarithmic.

force.x.continuous

Logical value indicating whether x-values should be taken as continuous, even if categorical.

binvar

Variable to be used for binning.

bins

The number of bins to be used. The default is 10.

...

Other arguments that may be needed in the function.

See also

xpose.data-class, Cross-references above.

Author

E. Niclas Jonsson, Mats Karlsson, Andrew Hooker & Justin Wilkins